Cheesecake Cupcakes

24 servings
Prep Time 30 minutes
Cook Time 30 minutes
Cooling Time 1 hour
Total Time 2 hours

Cheesecake Cupcakes are a fun birthday dessert recipe! Baked mini cheesecakes topped with an easy buttercream frosting and rainbow sprinkles.

Swap out regular Vanilla Cupcakes with these frosted Mini Cheesecakes at your next special event for a Dessert that is just as fancy as it is fun.

Sabrina’s Easy Cheesecake Cupcakes Recipe

Cheesecake Cupcakes are great for parties because they feed a crowd and store great in the fridge, so you can make them days ahead of time. A vanilla cheesecake base makes it easy to switch them up for any occasion. Swap rainbow sprinkles for seasonal ones during the holidays. The possibilities are endless and no matter how you decorate them, they are always a fun, delicious crowd-pleaser!

These cheesecakes are so easy to make. They only need to be baked for about 30 minutes. You want to ensure they are completely cool before you frost them, so plan an hour to cool at room temperature or 30 minutes in the fridge. Placing the muffin tin on a wire rack helps cool them quicker because the heat isn’t trapped below them.

Ingredients

  • Graham Cracker Crust: A homemade graham cracker crust is simple and made in minutes. It’s great because it doesn’t have to be baked beforehand and ready at the touch of a food processor.
  • Cream Cheese: These mini cheesecakes only use cream cheese for the filling. Some recipes use sour cream, but this recipe gets that smooth, thick NY Cheesecake consistency with just cream cheese and eliminates the need for a water bath.
  • Lemon: The acidity of the lemon juice helps the cream cheese filling set, so it doesn’t have to bake or cool as long. Plus it gives them that tasty tangy cheesecake flavor without using sour cream.
  • Buttercream Frosting: Having a good buttercream frosting recipe on hand is an easy way to elevate your cakes and cupcakes. Even if you are frosting brownies or boxed cake, freshly made buttercream is worth a few extra steps.

How to Make

Time needed: 2 hours.

  1. Prep:

    Preheat your oven to 350 degrees. Grease two 12-cup muffin tins with baking spray or line them with paper liners. Make sure your cream cheese and eggs are at room temperature.

  2. Crust:

    Place graham crackers and sugar in a food processor and process until they are completely fine crumbs. Add melted butter to the crumbs and pulse until well combined. Spoon the graham cracker crumble into the muffin cups and press down until even and flat. Set pans aside.

  3. Cheesecakes:

    In a medium bowl, use an electric mixer to blend cream cheese, sugar, egg, lemon juice, and vanilla extract until smooth. Divide the filling evenly between the muffin cups, filling about ½ ways full. Bake until the centers are almost set, 20-25 minutes. Set the pans on a wire rack and cool completely before frosting.Cupcake tin with graham cracker crust adding cream cheese mixture.

  4. Frosting:

    In a stand mixer on low speed, cream the butter, then add the powdered sugar in ½ cup increments until fully combined. Raise the speed to medium-high for 2 minutes. Add in the vanilla extract and heavy cream and beat until light and fluffy, about 1 more minute. Spoon frosting into a large piping bag with a large star tip. Pipe frosting onto cooled mini cheesecakes and top with rainbow sprinkles.

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Cheesecake Cupcakes

Cheesecake Cupcakes are a fun birthday dessert recipe! Baked mini cheesecakes topped with an easy buttercream frosting and rainbow sprinkles.
Yield 24 servings
Prep Time 30 minutes
Cook Time 30 minutes
Total Time 2 hours
Course Dessert
Cuisine American
Author Sabrina Snyder

Ingredients
 

Mini Cheesecakes:

  • 1 1/2 cups graham cracker crumbs
  • 1/3 cup sugar
  • 1/3 cup unsalted butter , melted
  • 16 ounces cream cheese , softened
  • 1 cup sugar
  • 1 tablespoon lemon juice
  • 2 teaspoons vanilla extract
  • 2 large eggs , room temperature

Buttercream Frosting:

  • 1 cup unsalted butter , softened
  • 6 cups powdered sugar , about 2 pounds
  • 1 teaspoon vanilla extract
  • 2-4 tablespoons heavy cream
  • 1/4 cup rainbow sprinkles

Instructions

Mini Cheesecakes:

  • Preheat oven to 350 degrees and spray a two 12 cup muffin tins with baking spray.
  • Add graham crackers and sugar to food processor until fine crumbs then add in the melted butter and pulse until well combined.
  • Spoon the crumble into the muffin cups and press down.
  • In a medium mixing bowl whisk together the cream cheese, sugar, egg, lemon juice and vanilla extract until smooth.
  • Gently spoon over the graham cracker crust until the muffin cups are ½ full.
  • Bake until centers are almost set, 20-25 minutes. Cool completely.

Buttercream Frosting:

  • To your stand mixer on low speed cream the butter then start adding in the powdered sugar in ½ cup increments until fully combined then raise the speed to medium-high for 2 additional minutes.
  • Add in the vanilla extract and heavy cream and beat until light and fluffy for an additional 1 minute.
  • Add to a large piping bag with a large star tip.
  • Pipe frosting onto cooled mini cheesecakes and top with rainbow sprinkles.

Nutrition

Calories: 357kcal | Carbohydrates: 48g | Protein: 2g | Fat: 18g | Saturated Fat: 11g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 5g | Trans Fat: 0.4g | Cholesterol: 63mg | Sodium: 102mg | Potassium: 46mg | Fiber: 0.2g | Sugar: 44g | Vitamin A: 610IU | Vitamin C: 0.2mg | Calcium: 29mg | Iron: 0.3mg

Chef’s Note: Fun to Decorate!

Cheesecake cupcakes are a fun canvas for decorating with colorful toppings and sauces just like regular cupcakes. I went with a simple birthday theme of rainbow sprinkles but really, you can get so creative You can pick up cute festive sprinkles at craft stores and discount stores (like Ross or TJ Maxx) to switch these up for different holidays, special occasions, and themed parties. For kid parties, I like to do a Build Your Own Cheesecake Cupcake Bar with toppings like fresh fruit, chocolate chips, Caramel Sauce, Chocolate Ganache, and of course, decorative sprinkles and candies.

Can this be made ahead of time?

Yes, cheesecake cupcakes can be made ahead of time. After baking and cooling, store them in the refrigerator for up to 3 days before frosting them. They can also be frozen for up to 3 months. Thaw them in the refrigerator before making the frosting fresh and decorating as usual.

Nutritional Facts

Nutrition Facts
Cheesecake Cupcakes
Amount Per Serving
Calories 357 Calories from Fat 162
% Daily Value*
Fat 18g28%
Saturated Fat 11g69%
Trans Fat 0.4g
Polyunsaturated Fat 1g
Monounsaturated Fat 5g
Cholesterol 63mg21%
Sodium 102mg4%
Potassium 46mg1%
Carbohydrates 48g16%
Fiber 0.2g1%
Sugar 44g49%
Protein 2g4%
Vitamin A 610IU12%
Vitamin C 0.2mg0%
Calcium 29mg3%
Iron 0.3mg2%
* Percent Daily Values are based on a 2000 calorie diet.

Baking Recipe Tips & Tricks

  • Cupcake Liners: Use high-quality cupcake liners or silicone baking cups to ensure easy removal and a neat presentation.
  • Mixing Equipment: A stand or hand mixer can help achieve a smooth, lump-free batter.
  • Cream Cheese: Use full-fat cream cheese for a rich, creamy texture. Low-fat versions can sometimes be too watery or affect the flavor.
  • Fresh Ingredients: Fresh eggs and quality vanilla extract make a noticeable difference in flavor.
  • Room-Temperature Ingredients: Before mixing, ensure that the cream cheese, eggs, and other dairy ingredients are at room temperature. This helps achieve a smooth and creamy batter without lumps.
  • Crust Preparation: For the base, use crushed graham crackers mixed with melted butter. Press the mixture firmly into the bottom of each cupcake liner to create a solid foundation.
  • Pre-Bake the Crust: Pre-bake for a firmer crust for about 5-10 minutes before adding the cheesecake batter.

How to Store

  • Serve: Cheesecake cupcakes are best kept chilled until you are ready to serve them. You can keep them at room temperature for up to 2 hours but then they need to be refrigerated.
  • Store: Your cupcakes can be stored in an airtight container in the fridge for up to one week. If they aren’t frosted, stack them, placing a piece of parchment between layers so they don’t stick, and store the frosting in a separate container.
  • Freeze: It’s best to freeze the mini cheesecakes and keep the frosting separate until you want to serve them. Freeze for up to 3 months in an airtight freezer-safe container. Thaw in the fridge so the cheesecake doesn’t “sweat,” aka collect condensation.

Frequent Questions

What are cheesecake cupcakes?

Cheesecake cupcakes are miniature versions of cheesecake baked in a cupcake liner. They typically have a graham cracker crust and a creamy cheesecake filling but they are topped with frosting like cupcakes!

Can I use store-bought crusts for cheesecake cupcakes?

Yes, you can use store-bought graham cracker crusts, but you’ll have to cut them into small pieces or crumbs and press them into the bottom of your cupcake liners. Since it’s not freshly made with butter, the broken crust will be more crumbly and not hold together well.

How do I prevent my cheesecake cupcakes from cracking?

Avoid over-mixing the batter to minimize cracking, as this can incorporate too much air. Bake at a lower temperature and avoid opening the oven door frequently. Additionally, a water bath (placing the cupcake pan in a larger pan of hot water) can help regulate the temperature and prevent cracking.

How do I know when the cheesecake cupcakes are done?

Cheesecake cupcakes are done when the edges are set, but the centers are still slightly jiggly. They will firm up as they cool. Try not to overbake them or it will dry the cheeseacke out.

Variations

  • Fruit Cheesecake Cupcakes: Make a Cherry Cheesecake Cupcake by adding 2 tablespoons of Cherry Pie Filling to the cheesecake base before baking. Swirl in Strawberry Jam and top the frosting with fresh berries for Strawberry Cheesecake Cupcakes.
  • Oreo Cheesecake Cupcakes: We all know that Oreos make just about everything better. Swap the graham crackers for Oreo cookies and stir crushed Oreos into the cheesecake batter. Sprinkle Oreo crumbs over the frosting for the chocolaty Oreo finishing touch.
  • Brownie Cheesecake Cupcakes: Have 3 desserts with a brownie crust instead of a graham cracker crust! Either bake fresh brownies or press store-bought brownie pieces into the bottom of the paper liners for the crust. Top each cupcake with a tiny brownie piece or brownie crumbles.
  • Toppings: Some more toppings you can try for these mini cheesecakes are fruit compote or Raspberry Sauce, chocolate curls or chocolate shavings, crushed nuts, and whipped cream.

More Delicious Mini Cheesecakes

Cheesecake Cupcakes collage of finished cupcakes and process. Recipe name in red banner across bottom third.

About the Author: Sabrina Snyder

Sabrina is a professionally trained Private Chef of over 10 years with ServSafe Manager certification in food safety. She creates all the recipes here on Dinner, then Dessert, fueled in no small part by her love for bacon.

Sabrina Snyder is a professionally trained personal and private chef of over 10 years who is the creator and developer of all the recipes on Dinner, then Dessert.

She is also the author of the cookbook Dinner, then Dessert – Satisfying Meals Using Only 3, 5 or 7 Ingredients, published by Harper Collins.

She started Dinner, then Dessert as a business in her office as a lunch service for her coworkers who admired her lunches before going to culinary school and becoming a full time personal chef and private chef.

As a personal chef Sabrina would cook for families one day a week and cook their entire week of dinners. All grocery shopping, cooking and cleaning was done along with instructions on reheating. As a private chef she cooked for private parties and cooked in family homes in the evenings for families on a nightly basis after working as a personal chef during the day.

Sabrina has been certified as a ServSafe Manager since 2007 and was a longstanding member of the USPCA Personal Chef Association including being on the board of the Washington DC Chapter of Chefs in the US Personal Chef Association when they won Chapter of the year.

As a member of the community of food website creators Sabrina Snyder has spoken at many conferences regarding her experiences as a food writer including the Indulge Food Conference, Everything Food Conference, Haven Food Conference and IACP Annual Food Professionals Conference.

Sabrina lives with her family in sunny California.

Dinner, then Dessert, Inc. owns the copyright on all images and text and does not allow for its original recipes and pictures to be reproduced anywhere other than at this site unless authorization is given. Read my disclosure and copyright policy. This post may contain affiliate links.

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